The multiMiR R package and database:
Integration of microRNA-target interactions along with their disease and drug associations
(Nucleic Acids Res. 2014 Jul 24. pii: gku631)
Please note the Bioconductor R package will connect to the newest database version by default and return the version number. You may manually change database versions to use previous versions, but you must make this change every time you load multiMiR.
| Category | External Database | Version | Last Update | Human Records | Mouse Records | Rat Records | Total Records |
|---|---|---|---|---|---|---|---|
| Validated miRNA-target Interactions | miRecords | 4 | Apr 27, 2013 | 2,425 | 449 | 171 | 3,045 |
| miRTarBase | 9 | Sept, 2021 | 544,588 | 50,673 | 652 | 595,913 | |
| TarBase | 9 | 2023 | 433,048 | 209,831 | 1,307 | 644,186 | |
| Predicted miRNA-target Interactions | DIANA-microT-CDS | 5 | Sept, 2013 | 7,664,602 | 3,747,171 | 0 | 11,411,773 |
| ElMMo | 5 | Jan, 2011 | 3,959,112 | 1,449,133 | 547,191 | 5,955,436 | |
| MicroCosm | 5 | Sept, 2009 | 762,987 | 534,735 | 353,378 | 1,651,100 | |
| miRanda | N/A | Aug, 2010 | 5,429,955 | 2,379,881 | 247,368 | 8,057,204 | |
| miRDB | 6 | June, 2019 | 1,990,425 | 1,091,263 | 199,250 | 3,280,938 | |
| PicTar | 2 | Dec 21, 2012 | 404,066 | 302,236 | 0 | 706,302 | |
| PITA | 6 | Aug 31, 2008 | 7,710,936 | 5,163,153 | 0 | 12,874,089 | |
| TargetScan | 8 | Sept 2021 | 13,964,425 | 13,964,425 | 0 | 13,964,425 | |
| miRNA-disease/drug Associations | miR2Disease | N/A | Mar 14, 2011 | 2,875 | 0 | 0 | 2,875 |
| Pharmaco-miR (Verified Sets) | N/A | N/A | 308 | 5 | 0 | 313 | |
| PhenomiR | 2 | Feb 15, 2011 | 15,138 | 491 | 0 | 15,629 |
| Category | External Database | Version | Last Update | Human Records | Mouse Records | Rat Records | Total Records |
|---|---|---|---|---|---|---|---|
| Validated miRNA-target Interactions | miRecords | 4 | Apr 27, 2013 | 2425 | 449 | 171 | 3045 |
| miRTarBase | 7.0 | Sept, 2017 | 544588 | 50673 | 652 | 595913 | |
| TarBase | 8 | 2018 | 433048 | 209831 | 1307 | 644186 | |
| Predicted miRNA-target Interactions | DIANA-microT-CDS | 5 | Sept, 2013 | 7664602 | 3747171 | 0 | 11411773 |
| ElMMo | 5 | Jan, 2011 | 3959112 | 1449133 | 547191 | 5955436 | |
| MicroCosm | 5 | Sept, 2009 | 762987 | 534735 | 353378 | 1651100 | |
| miRanda | N/A | Aug, 2010 | 5429955 | 2379881 | 247368 | 8057204 | |
| miRDB | 6 | June, 2019 | 1990425 | 1091263 | 199250 | 3280938 | |
| PicTar | 2 | Dec 21, 2012 | 404066 | 302236 | 0 | 706302 | |
| PITA | 6 | Aug 31, 2008 | 7710936 | 5163153 | 0 | 12874089 | |
| TargetScan | 7.2 | March, 2018 | 13906497 | 10442093 | 0 | 24348590 | |
| miRNA-disease/drug Associations | miR2Disease | N/A | Mar 14, 2011 | 2875 | 0 | 0 | 2875 |
| Pharmaco-miR (Verified Sets) | N/A | N/A | 308 | 5 | 0 | 313 | |
| PhenomiR | 2 | Feb 15, 2011 | 15138 | 491 | 0 | 15629 |
| Category | External Database | Version | Last Update | Human Records | Mouse Records | Rat Records | Total Records |
|---|---|---|---|---|---|---|---|
| Validated miRNA-target Interactions | miRecords | 4 | Apr 27, 2013 | 2425 | 449 | 171 | 3045 |
| miRTarBase | 6.1 | Sept, 2015 | 440040 | 48731 | 470 | 489281 | |
| TarBase | 6 | 2012 | 23447 | 9024 | 67 | 32538 | |
| Predicted miRNA-target Interactions | DIANA-microT-CDS | 5 | Sept, 2013 | 7664602 | 3747171 | 0 | 11411773 |
| ElMMo | 5 | Jan, 2011 | 3959112 | 1449133 | 547191 | 5955436 | |
| MicroCosm | 5 | Sept, 2009 | 762987 | 534735 | 353378 | 1651100 | |
| miRanda | N/A | Aug, 2010 | 5429955 | 2379881 | 247368 | 8057204 | |
| miRDB | 5 | Aug, 2014 | 1124831 | 654192 | 195136 | 1974159 | |
| PicTar | 2 | Dec 21, 2012 | 404066 | 302236 | 0 | 706302 | |
| PITA | 6 | Aug 31, 2008 | 7710936 | 5163153 | 0 | 12874089 | |
| TargetScan | 7.1 | Jun, 2016 | 13801621 | 10452055 | 0 | 24253676 | |
| miRNA-disease/drug Associations | miR2Disease | N/A | Mar 14, 2011 | 2875 | 0 | 0 | 2875 |
| Pharmaco-miR (Verified Sets) | N/A | N/A | 308 | 5 | 0 | 313 | |
| PhenomiR | 2 | Feb 15, 2011 | 15138 | 491 | 0 | 15629 |
| Category | External Database | Version | Last Update | Human Records | Mouse Records | Rat Records | Total Records |
|---|---|---|---|---|---|---|---|
| Validated miRNA-target Interactions | miRecords | 4 | Apr 27, 2013 | 2425 | 449 | 171 | 3045 |
| miRTarBase | 6.1 | Sept, 2015 | 440040 | 48731 | 470 | 489281 | |
| TarBase | 6 | 2012 | 23447 | 9024 | 67 | 32538 | |
| Predicted miRNA-target Interactions | DIANA-microT-CDS | 5 | Sept, 2013 | 7664602 | 3747171 | 0 | 11411773 |
| ElMMo | 5 | Jan, 2011 | 3959112 | 1449133 | 547191 | 5955436 | |
| MicroCosm | 5 | Sept, 2009 | 762987 | 534735 | 353378 | 1651100 | |
| miRanda | N/A | Aug, 2010 | 5429955 | 2379881 | 247368 | 8057204 | |
| miRDB | 5 | Aug, 2014 | 1124831 | 654192 | 195136 | 1974159 | |
| PicTar | 2 | Dec 21, 2012 | 404066 | 302236 | 0 | 706302 | |
| PITA | 6 | Aug 31, 2008 | 7710936 | 5163153 | 0 | 12874089 | |
| TargetScan | 6.2 | Jun, 2012 | 6298122 | 2590814 | 0 | 8888936 | |
| miRNA-disease/drug Associations | miR2Disease | N/A | Mar 14, 2011 | 2875 | 0 | 0 | 2875 |
| Pharmaco-miR (Verified Sets) | N/A | N/A | 308 | 5 | 0 | 313 | |
| PhenomiR | 2 | Feb 15, 2011 | 15138 | 491 | 0 | 15629 |
| Category | External Database | Version | Last Update | Human Records | Mouse Records | Rat Records | Total Records |
|---|---|---|---|---|---|---|---|
| Validated miRNA-target Interactions | miRecords | 4 | Apr 27, 2013 | 2425 | 449 | 171 | 3045 |
| miRTarBase | 4.5 | Nov 1, 2013 | 47003 | 9448 | 331 | 56782 | |
| TarBase | 6 | 2012 | 23447 | 9024 | 67 | 32538 | |
| Predicted miRNA-target Interactions | DIANA-microT-CDS | 5 | Sept, 2013 | 7664602 | 3747171 | 0 | 11411773 |
| ElMMo | 5 | Jan, 2011 | 3959112 | 1449133 | 547191 | 5955436 | |
| MicroCosm | 5 | Sept, 2009 | 762987 | 534735 | 353378 | 1651100 | |
| miRanda | N/A | Aug, 2010 | 5429955 | 2379881 | 247368 | 8057204 | |
| miRDB | 4 | Jan, 2012 | 722269 | 348778 | 109409 | 1180456 | |
| PicTar | 2 | Dec 21, 2012 | 404066 | 302236 | 0 | 706302 | |
| PITA | 6 | Aug 31, 2008 | 7710936 | 5163153 | 0 | 12874089 | |
| TargetScan | 6.2 | Jun, 2012 | 6298122 | 2590814 | 0 | 8888936 | |
| miRNA-disease/drug Associations | miR2Disease | N/A | Mar 14, 2011 | 2875 | 0 | 0 | 2875 |
| Pharmaco-miR (Verified Sets) | N/A | N/A | 308 | 5 | 0 | 313 | |
| PhenomiR | 2 | Feb 15, 2011 | 15138 | 491 | 0 | 15629 |