University of Colorado School of Public Health

The multiMiR R package and database:
Integration of microRNA-target interactions along with their disease and drug associations
(Nucleic Acids Res. 2014 Jul 24. pii: gku631)

Please note the Bioconductor R package will connect to the newest database version by default and return the version number. You may manually change database versions to use previous versions, but you must make this change every time you load multiMiR.

Database v2.2 - updated 8/8/2017

CategoryExternal DatabaseVersionLast UpdateHuman RecordsMouse RecordsRat RecordsTotal Records
Validated miRNA-target InteractionsmiRecords4Apr 27, 201324254491713045
miRTarBase6.1Sept, 201544004048731470489281
TarBase620122344790246732538
Predicted miRNA-target InteractionsDIANA-microT-CDS5Sept, 201376646023747171011411773
ElMMo5Jan, 2011395911214491335471915955436
MicroCosm5Sept, 20097629875347353533781651100
miRandaN/AAug, 2010542995523798812473688057204
miRDB5Aug, 201411248316541921951361974159
PicTar2Dec 21, 20124040663022360706302
PITA6Aug 31, 200877109365163153012874089
TargetScan7.1Jun, 20161380162110452055024253676
miRNA-disease/drug AssociationsmiR2DiseaseN/AMar 14, 20112875002875
Pharmaco-miR (Verified Sets)N/AN/A30850313
PhenomiR2Feb 15, 201115138491015629

Database v2.1 - updated 12/22/2016

CategoryExternal DatabaseVersionLast UpdateHuman RecordsMouse RecordsRat RecordsTotal Records
Validated miRNA-target InteractionsmiRecords4Apr 27, 201324254491713045
miRTarBase6.1Sept, 201544004048731470489281
TarBase620122344790246732538
Predicted miRNA-target InteractionsDIANA-microT-CDS5Sept, 201376646023747171011411773
ElMMo5Jan, 2011395911214491335471915955436
MicroCosm5Sept, 20097629875347353533781651100
miRandaN/AAug, 2010542995523798812473688057204
miRDB5Aug, 201411248316541921951361974159
PicTar2Dec 21, 20124040663022360706302
PITA6Aug 31, 200877109365163153012874089
TargetScan6.2Jun, 20126298122259081408888936
miRNA-disease/drug AssociationsmiR2DiseaseN/AMar 14, 20112875002875
Pharmaco-miR (Verified Sets)N/AN/A30850313
PhenomiR2Feb 15, 201115138491015629

Database v1.0 - v2.0

CategoryExternal DatabaseVersionLast UpdateHuman RecordsMouse RecordsRat RecordsTotal Records
Validated miRNA-target InteractionsmiRecords4Apr 27, 201324254491713045
miRTarBase4.5Nov 1, 201347003944833156782
TarBase620122344790246732538
Predicted miRNA-target InteractionsDIANA-microT-CDS5Sept, 201376646023747171011411773
ElMMo5Jan, 2011395911214491335471915955436
MicroCosm5Sept, 20097629875347353533781651100
miRandaN/AAug, 2010542995523798812473688057204
miRDB4Jan, 20127222693487781094091180456
PicTar2Dec 21, 20124040663022360706302
PITA6Aug 31, 200877109365163153012874089
TargetScan6.2Jun, 20126298122259081408888936
miRNA-disease/drug AssociationsmiR2DiseaseN/AMar 14, 20112875002875
Pharmaco-miR (Verified Sets)N/AN/A30850313
PhenomiR2Feb 15, 201115138491015629